Source is a flat file and want to load unique and duplicate
records separately into two separate targets; right??

Answer Posted / rani

Take Source Qualifier,next place sorter t/f,select option Distinct in sorter and load it in Unique_target.

Take lookup transformation and lookup on target and compare it with source, when a record occurs more than 1 ,delete that record from target using Update strategy -DD_DELETE 2 and load
in Duplicate_target.This is a source in another pipeline and take unconnected lookup and write lookup override like count(*) having >1 then load them in Duplicate_target.

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