How do you find repeats within one DNA sequence?



How do you find repeats within one DNA sequence? ..

Answer / guest

Suppose your sequence is stored in a file seq.fna. Then
type
java -jar PHD.jar -i seq.fna
to find repeats within this sequence. If you are running
the PatternHunter demo version, replace "java -jar PH.jar"
with "ph".

Is This Answer Correct ?    0 Yes 0 No

Post New Answer

More Bio Informatics Interview Questions

A radioactive element x has an atomic number of 100. It decays directly into an element y which decays directly into element z. In both processes a charged particle is emitted. Which of the following statements would be true? (a) y has an atomic number of 102 (b) y has an atomic number of 101 (c) z has an atomic number of 100 (d) z has an atomic number of 101

1 Answers   Wipro,


How do you customize database for blast?

0 Answers  


What is the most abundant element in the universe ?

1 Answers   Wipro,


Why do you think that bioinformatics is important?

0 Answers  


What is the product of the irrational roots of the equation (2x-1)(2x-3)(2x-5)(2x-7)=9?

1 Answers  






what is the meaning of science?

7 Answers  


What is the idea behind ?weighting? sequences in the package CLUSTAL W for multiple alignment? How are these weights calculated?

0 Answers  


If you had 1,500 base pair pieces of random DNA and you have to know how many of them had homology to known genes, what would you do to determine that?

1 Answers  


What are the main differences between parsimony,distance and likelihood-based algorithms?

0 Answers  


Describe the aim of microarray data analysis?

0 Answers  


A man speaks the truth 3 out of 4 times. He throws a die and reports it to be a 6. What is the probability of it being a 6? (a) 3/8 (b) 5/8 (c) 3/4 (d) None of the above

11 Answers   HDFC, Microsoft, MNC, TCS, Wipro,


Exactly how fast is PatternHunter when comparing two DNA sequences?

1 Answers  


Categories