How do you customise database for blast?
Step 1. Assemble your sequences.
Put all your sequences in Fasta format in a single file.
This file should be located in a suitably named
subdirectory of your home directory on the UBiC Blast
server. The definition line for each sequence should start
with a unique identifier for that sequence.
Step 2. Convert this sequence file to a Blastable database.
The command formatdb converts your Fasta file of sequences
to a set of files that can be queried with command-line
BLAST.
Step 3. Test Blast on your database.
See the UBiC tutorial, Using Command-line BLAST. In the
blastall command-line you will need to specify the location
of your database by typing: -
d /disk2/home/myhome/blastdbs/custom.aa.
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Define toxicogenomics?
NLO : RPS : : ? : ZXA (a) VUW (b) VTR (c) VTW (d) TRP
If the letters of the word ?rachit? are arranged in all possible ways and these words are written out as in a dictionary, what is the rank of the word ?rachit?. (a) 485 (b) 480 (c) 478 (d) 481
Image of point (3,8) in the line x + 3y = 7 is (a) (-1,-4) (b) (-1,4) (c) (2,-4) (d) (-2,-4)
A solid is completely immersed in liquid. The force exerted by the liquid on the solid will (a) Increase if it is pushed deeper inside the liquid (b) Change if its orientation is changed (c) Decrease if it is taken partially out of the liquid (d) None of the above.
what is a Homologue?
What is the science of bioinformatics?
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What is a homologue?
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What do you think are the more interesting areas of bioinformatics?
what is FASTA format?